Table of contents
Create and Update Conda Environments
Example yaml file.
name: h5n1day100 channels: - bioconda - conda-forge dependencies: - r=3.5.1 - snakemake=5.4.5 - r-tidyverse=1.2.1 - r-feather=0.3.2 - r-venndiagram=1.6.20 - r-tmod=0.40 - r-biocmanager=1.30 - bioconductor-biobase=2.42 - r-logging=0.9_107
conda env create --file=environment.yaml
conda env update --file=environment.yaml
To activate conda environment
conda activate h5n1day100
To deactivate conda environment
To remove conda environment
conda env remove --name=<env name>
To Completely remove Anaconda from your Computer
To remove the configs:
conda install anaconda-clean anaconda-clean --yes
Once the configs are removed you can delete the anaconda install folder, which is usually under your home dir:
rm -rf ~/anaconda3
anaconda-clean --yes command creates a backup in your home directory of the format
~/.anaconda_backup/<timestamp>. Make sure to delete that one also.
Now if you want to clean all, you will also have to delete the two last lines added to your .bash_profile. They look like:
# added by Anaconda3 5.2.0 installer export PATH="/Users/ody/anaconda3/bin:$PATH"