Conda
Table of contents
Create and Update Conda Environments
Example yaml file.
name: h5n1day100
channels:
- bioconda
- conda-forge
dependencies:
- r=3.5.1
- snakemake=5.4.5
- r-tidyverse=1.2.1
- r-feather=0.3.2
- r-venndiagram=1.6.20
- r-tmod=0.40
- r-biocmanager=1.30
- bioconductor-biobase=2.42
- r-logging=0.9_107
conda env create --file=environment.yaml
conda env update --file=environment.yaml
To activate conda environment conda activate h5n1day100
To deactivate conda environment conda deactivate
To remove conda environment conda env remove --name=<env name>
To Completely remove Anaconda from your Computer
To remove the configs:
conda install anaconda-clean
anaconda-clean --yes
Once the configs are removed you can delete the anaconda install folder, which is usually under your home dir:
rm -rf ~/anaconda3
Also, the anaconda-clean --yes
command creates a backup in your home directory of the format ~/.anaconda_backup/<timestamp>
. Make sure to delete that one also.
Now if you want to clean all, you will also have to delete the two last lines added to your .bash_profile. They look like:
# added by Anaconda3 5.2.0 installer
export PATH="/Users/ody/anaconda3/bin:$PATH"